Scaffold Ga0114340_1000634

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000634
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25859
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010321	Metagenome / Metatranscriptome	305	Y
F011583	Metagenome	289	Y
F011667	Metagenome / Metatranscriptome	288	Y
F065783	Metagenome / Metatranscriptome	127	N
F074410	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100063423	F011667	N/A	VLYLIENMTTMNLENKIKDVIEMLEDAISLEDWKLVDEARKELTFLFEEIESSFPMDGYDDEELD*
Ga0114340_100063427	F011583	N/A	MKPYFDYWYKRTIKDGLKAIRTIIGLGLAVSLGYSVNLPIGIMVFGYVLVDTLIDKN*
Ga0114340_100063436	F065783	N/A	MKTLIKLQSLNMWADESGVYSPNEDGTPNFEDKKLYSDINPEWFQNLSSEDKEQISILIKNKNN*
Ga0114340_100063438	F010321	N/A	MDILDPKQQEELDRLNQALVSQSLQPEDRKLLNRKLFNPQTGELQLFADDGKGGVKLSSINLFGD*
Ga0114340_10006348	F074410	AGGA	MNVLLLTSCNRIKQTLLSLSLNAQIIKERFSVVIVDSSTPHLDAETACTQIQSEDPYNVVKPYNYCADVNLLYDAHKWFPQVEEFKVIHFQPRLLKQRGEATSVALGLTQAALIGDRQHSDKQNFCLKLTGTSILTKDLLSTLPTELSYKDVLTWHRANIGGYERSTRIFGCRPDVLVSNIVKEGWSNWCDDTTGIFEQRFARFIEKTIPQDRINYTDKSEDGFLLEGGMAMQQIYGRVRIEKFIEDNDINTNSTPYLKEFINGGIW*