Basic Information | |
---|---|
Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1000402 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 42998 |
Total Scaffold Genes | 55 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (74.55%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000369 | Metagenome / Metatranscriptome | 1222 | Y |
F000376 | Metagenome / Metatranscriptome | 1216 | Y |
F003408 | Metagenome / Metatranscriptome | 488 | Y |
F023361 | Metagenome / Metatranscriptome | 210 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114340_100040217 | F000376 | AGGA | MSEYQEMAKECKCCGKHVPLPTVMKEYNNIIMCPTTFYNVVEYKRIWESYGSRPMGSIRKHFSEYVQQIVEQSIDKSV* |
Ga0114340_100040220 | F000369 | AGAAG | MSDIEPAVHFDRMNKVVEELLKGNSATQIATLTGYSRKEVLEFIDEWKGVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLSVKAGALKLIADIETKRIAMLQSVGVLENTEIASQIAETERKQEILVGILKEVTAGCPKCKMDVAKRLSQITGIVEPVYIDTEVITNVQ* |
Ga0114340_100040254 | F003408 | N/A | MQKTELEKRTFLASIQGIELNDNSSKNEEGSSFEDVKRRALGINASADDVVSLQGSFASEAGFGIGAGLGYRIE* |
Ga0114340_100040255 | F023361 | N/A | ACAVALEKQLPELVKDKDAFEDTLDVPTINRILEICGGIKMDDPNLLAAAVLAGQN* |
⦗Top⦘ |