Scaffold Ga0114340_1000402

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000402
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42998
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (74.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F003408	Metagenome / Metatranscriptome	488	Y
F023361	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100040217	F000376	AGGA	MSEYQEMAKECKCCGKHVPLPTVMKEYNNIIMCPTTFYNVVEYKRIWESYGSRPMGSIRKHFSEYVQQIVEQSIDKSV*
Ga0114340_100040220	F000369	AGAAG	MSDIEPAVHFDRMNKVVEELLKGNSATQIATLTGYSRKEVLEFIDEWKGVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLSVKAGALKLIADIETKRIAMLQSVGVLENTEIASQIAETERKQEILVGILKEVTAGCPKCKMDVAKRLSQITGIVEPVYIDTEVITNVQ*
Ga0114340_100040254	F003408	N/A	MQKTELEKRTFLASIQGIELNDNSSKNEEGSSFEDVKRRALGINASADDVVSLQGSFASEAGFGIGAGLGYRIE*
Ga0114340_100040255	F023361	N/A	ACAVALEKQLPELVKDKDAFEDTLDVPTINRILEICGGIKMDDPNLLAAAVLAGQN*