Scaffold Ga0114340_1000386

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000386
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36874
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (62.34%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001443	Metagenome / Metatranscriptome	693	Y
F002268	Metagenome / Metatranscriptome	576	Y
F012023	Metagenome / Metatranscriptome	284	Y
F034468	Metagenome	174	Y
F066485	Metagenome / Metatranscriptome	126	Y
F088912	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100038622	F012023	GGA	MEKIDYAKLNERVVEQAYEAVLGEMSKEQLQKLIQDKFDRARKYHEALAKAPTFSVD*
Ga0114340_10003864	F001443	AGGAG	MPMYETTVRTPQGEEKKRVYADTPQEAKKLFESLYGGPRAVPYIPKIVAS*
Ga0114340_100038662	F002268	GGAG	MSGTPASSSPGITGFIEIFEGRLNKMKLHLKEELGKAKSDRDRKAIRRLTADARKLNKTLKEMRNASARLCPHCGEKL*
Ga0114340_100038663	F034468	AGGAG	MNEPFYITYKLVEEILQKHDVHCVFELDAPMQIFTRLMSAKFYTTQDVPSREAEFRECWALSEIYCPHEGIDRRREYGMETVL*
Ga0114340_100038664	F088912	AGG	MTEGERAGRWAMLYLYTVLFALWFNIVAIAAWHIKEWFL*
Ga0114340_100038666	F066485	GGAG	MKIGFSFGRCIRDIVNGDVSIDDVAFLITATKEPGYLLGLDHDSCKEVAHLLWSSNRVLQPRAQGMHRHAQPENSVWVDMFPTQLSENQSVKTAWDNYRFMLHMTENIDSEALETFR*