NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1000386

Scaffold Ga0114340_1000386


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1000386 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36874
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (62.34%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001443Metagenome / Metatranscriptome693Y
F002268Metagenome / Metatranscriptome576Y
F012023Metagenome / Metatranscriptome284Y
F034468Metagenome174Y
F066485Metagenome / Metatranscriptome126Y
F088912Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100038622F012023GGAMEKIDYAKLNERVVEQAYEAVLGEMSKEQLQKLIQDKFDRARKYHEALAKAPTFSVD*
Ga0114340_10003864F001443AGGAGMPMYETTVRTPQGEEKKRVYADTPQEAKKLFESLYGGPRAVPYIPKIVAS*
Ga0114340_100038662F002268GGAGMSGTPASSSPGITGFIEIFEGRLNKMKLHLKEELGKAKSDRDRKAIRRLTADARKLNKTLKEMRNASARLCPHCGEKL*
Ga0114340_100038663F034468AGGAGMNEPFYITYKLVEEILQKHDVHCVFELDAPMQIFTRLMSAKFYTTQDVPSREAEFRECWALSEIYCPHEGIDRRREYGMETVL*
Ga0114340_100038664F088912AGGMTEGERAGRWAMLYLYTVLFALWFNIVAIAAWHIKEWFL*
Ga0114340_100038666F066485GGAGMKIGFSFGRCIRDIVNGDVSIDDVAFLITATKEPGYLLGLDHDSCKEVAHLLWSSNRVLQPRAQGMHRHAQPENSVWVDMFPTQLSENQSVKTAWDNYRFMLHMTENIDSEALETFR*

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