Scaffold Ga0114340_1000289

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000289
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39905
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (88.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018164	Metagenome / Metatranscriptome	236	Y
F036663	Metagenome / Metatranscriptome	169	N
F055673	Metagenome / Metatranscriptome	138	Y
F064418	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100028917	F064418	GGA	MAKPRPTEIRLVAKLLDPDNASEGQAEDLALEIIEALDSARLKRESYAVVAKLADWAPLQAWGDFSTKLQAEKFLGNLSAADGTGKGAVTKLEDPDNYKKRMGE*
Ga0114340_100028935	F036663	N/A	VIEIETSKLLPIVLPEERSELVTKVRIALNVAGDDLLDAPLQEILKGLQLRHGIPVVGCINIATLDALAVAPPEW*
Ga0114340_100028946	F018164	AGG	MAKIFRGPTYQKKLGRRYELWWASETVGKTVVKKNGAWTTIVVPQGDFLKTCDRVLRGGYEEQITDAEATELTAAGYGDYIFNV*
Ga0114340_100028956	F055673	GGAG	MKVFKKFEENLEYLGFDMAPVAWDIARMDFESDDDRIELLEDLTSRKEQLPIE*