Scaffold Ga0114340_1000254

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000254
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64864
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (16.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002643	Metagenome / Metatranscriptome	540	Y
F030415	Metagenome / Metatranscriptome	185	Y
F075742	Metagenome	118	Y
F085233	Metagenome	111	Y
F085263	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100025413	F085233	GGA	MDKNLNGENARAERIAFRINEQHLLLANIYENLVDRDFVPAEKDIRNLIIDLRLILKSMEDDDF*
Ga0114340_100025441	F075742	N/A	MKLKFKDSIYKKDLSNSIYQQSGANFGLTVNGGMLINNRPDGQTGIQQAAEVKKVIKKAEKVQMMSEAVYLGNIRSEMMEGPEMD*
Ga0114340_100025449	F030415	N/A	MKKSVPNLPASSKLQPPSGGGPQIKNALKAKPLAMSKGVPSKGAKVAVKAAGVAKKLVKKAK*
Ga0114340_100025450	F085263	N/A	MAKSKLIEEVIQEDVVVSEEVAAEVKKAVAPKDPYAVPELKEKDIVTTPGHTKRDFRN*
Ga0114340_100025472	F002643	N/A	MKYKDLNILVASINAVIGGQETKVQKKLFKLYEKVKPFHESYNAQRDELRLDNAATDDKGILLMDEKGEYKFNKEGVKKLTKDIEALNEKEFDFKPIEVINTNGLEKFTFLEDWTTGITFVKEEEEEL*