Scaffold Ga0114340_1000220

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000220
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45298
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (56.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014121	Metagenome / Metatranscriptome	265	Y
F024768	Metagenome / Metatranscriptome	204	Y
F067687	Metagenome / Metatranscriptome	125	N
F076003	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100022041	F024768	GGAG	MNYETEIIDGRKAIVRHIFKAHEIQVGSRWARADGSKGYVTVEGFNTYGATDPWIEVVYSWELNGEKFIHEKDVFIFQSKYCLIVDE*
Ga0114340_100022044	F076003	GGAG	MKLTAHELAVITDTLTHSLAVSNWNGYYTAQSRENVRNAIAGIMDSMSVEIITDKPNFTIDADAGI*
Ga0114340_100022047	F067687	GGAGG	MTDLSPKAQAIIDAADEVFSHGGRIRDGFASVLRVLADNVAPDDYRCFYGDKEYDAGMEGRNDEIREAILSIATELEAL*
Ga0114340_100022049	F014121	GGAG	MMTNTAYQIWETFKAELTQPATDDMKQALASSIRVISSLIYRDGVLANEPWLTHTAQELNEYADELEAL*