Scaffold Ga0114340_1000024

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000024
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 162703
• Total Scaffold Genes: 257
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (47.47%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000860	Metagenome / Metatranscriptome	857	Y
F027828	Metagenome / Metatranscriptome	193	Y
F057764	Metagenome / Metatranscriptome	136	Y
F060855	Metagenome	132	Y
F061794	Metagenome / Metatranscriptome	131	Y
F074796	Metagenome / Metatranscriptome	119	Y
F091925	Metagenome / Metatranscriptome	107	Y
F095417	Metagenome / Metatranscriptome	105	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_1000024168	F000860	AGGGGG	MLPKILLQDSNYDEWCEEAILNAYKEAAECDEFMFGDYDFCNEWLGVNE*
Ga0114340_1000024174	F074796	GAGG	MLPPFMSIDNLPQEPEDIVNIAARAGYLKVETDIGEVKLNSYNQVEIQPKGTPFGTKLKVEADGSITPTLTFDTKKMREPRKNINPEQILDDALEDFFNEQQ*
Ga0114340_1000024175	F060855	GAGG	MSNSKFNIFEFKFGKEKKSLKEWIKIGAIIHGSLDLISLIPGVEKRKAFNLMDEIQLRIGTIDIINDYIIQDEELLKYRIDRVIDKSLEEYND*
Ga0114340_100002429	F095417	AGG	MKNFIRWFFGPSKKPIVEEIDLYAKISELEHRIVKLEEENVETTNCLYELGNSVNAVDARIDIVLNIPKHYENFN*
Ga0114340_100002467	F061794	N/A	MPFTKKFPKSGDTTHIRVPKVYADLVLELMVLLDQKFEVDKGTHLLRKFISNLS*
Ga0114340_100002469	F091925	N/A	MTTISFTSGQILDIISALEEKEDALYAADDKHLAAYYMQMGAQFQRVYDRLQDVVPEKRVANLVLAA*
Ga0114340_100002476	F027828	N/A	MKTMLDKVLMVEELLNEKQLNALRDMLDVYKELQKEVHNYPPEDTLFTQTQREIFEIFDVD*
Ga0114340_100002481	F101038	N/A	MELTKSFPPLDGLVEFSNKKLKEFDYVQFGQDVIQFAATFAAIVVGVVSYVWTALQLWWEDNGEATQVNFIRFVVNVIDFIGAVVIATPKVYRWVKLNSNRLIDSLFFQVAFN*
Ga0114340_100002499	F057764	GGA	MKRKPPYWNFWKVVFAGWLIRYPGKMFRIIGVPLGILIVVIYNALTK*