Scaffold Ga0114340_1000014

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000014
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142186
• Total Scaffold Genes: 177
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 124 (70.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029288	Metagenome / Metatranscriptome	189	Y
F063424	Metagenome / Metatranscriptome	129	Y
F064411	Metagenome	128	Y
F065260	Metagenome / Metatranscriptome	128	Y
F091944	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100001412	F029288	N/A	MLDRANEARRKAEAQALFQSMLKAPHLVQTPKKLKGSRKEAKDTAIKDSKDGD*
Ga0114340_1000014125	F091944	AGGA	MAFTKTGVVTAPKIVPSAFGLLAVVKPENGPNEDQWIRGFSQEWETTLYSATNWDDSDSSDGEVVAAGTPTYYTEIKPFFIEAEELRSTLGFNGLDRIERLKRQIEGVTQHAMEVELWDGAVRKGESHANLALSDASATILNGGTALSPRRALALLEYSIGQASDGGEQGVIHVTRDVAALLSSNSNMIFHETEVDHLQTMGGTPVIVGSGYTGTGPDGATGASASATNKWIYATGTVRTYVGDVDVVNDNLAQAYDVSGNQNDMRLKAIRPAAVYFDTSIHLAVRVDLTA*
Ga0114340_1000014137	F065260	GAG	MTNTKYIKKNQQVPTHIAEFFKTSPAPELRDQLIRTLCDNHWTYEAVAAACDITRERVRQIYSSEPTQKNVRLPFDIPEPPLKPERSKPVYIEPAPETLKRLLDLQPYAQLVRSNGKAYREEAEEYTKLLNYAHTVEGVTLYRLAKRLGVTHGALRFRLVRYGYKKPVTATSKVYTPILKENRLK*
Ga0114340_100001417	F064411	N/A	VATFIASALGVIGAGAVMGVDLWLAMAMGGILAVAKVIERLSVAFLEDGKLTRAEINAAFAPAMSLKGVDQDGNSTTKAKAKK*
Ga0114340_100001462	F063424	AGGAG	MAKGKGGGKPTTPVKDNSGADRNNGKARKKHPKMFDPVKRRLVAVK*