Scaffold Ga0114339_1062246

Overview

Basic Information

• Taxon OID: 3300008106
• Scaffold ID: Ga0114339_1062246
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1665
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057099	Metagenome / Metatranscriptome	136	N
F065414	Metagenome / Metatranscriptome	127	N
F073066	Metagenome / Metatranscriptome	120	N
F085120	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114339_10622462	F065414	N/A	MSEPEVVINLNNLEELNIQKAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKDNKEKFKLIFKVLKRIKAMEPDNHLNLAS*
Ga0114339_10622463	F057099	N/A	MKILRKDWELINKIAWNILNLKLEDSKKTLNLGSSKDAFKLLGMLNTPVFVHILISSLCRTINLIRPETSEVDIVEIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNRKYFSKISRLKNFLIINQILSQIEVDKNYEENSHLFEALKGTKREGKNSKLKWLFYHKVPELPDLIEYR*
Ga0114339_10622464	F073066	N/A	MEEDLRKIHLEDLLKTLEDSDKDKKIEICNIMKEMVKEETEKAKRNQNNDMTHFLNKLKELLEKTINRYSE*
Ga0114339_10622465	F085120	AGG	MNNQARIIQLLNRLENMLRIEMEKARTDRDKDAIKLLEKLYNLIKKTEVNYSAQKH*