Scaffold Ga0114339_1053393

Overview

Basic Information

• Taxon OID: 3300008106
• Scaffold ID: Ga0114339_1053393
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1903
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005046	Metagenome	413	Y
F040476	Metagenome	161	Y
F041599	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114339_10533932	F005046	GAG	MERIKIGKPDIRYWTHFTKYQIAQTKALAELDYQVLGERVKTEGAPDADLVGLNYPPKLREQPFWCTLDWKTFKDFRLWTWLQATKALDLPITEKAETWYNYFSIEGNQIKAKELLDPFRKENKKPFDILLQ*
Ga0114339_10533933	F040476	AGTAGG	VYPTARRICSIQYDVPDQDPFEDLEINTHLQDSRLLPVTPAGDTISRDFLKQYLEERLQEYLALGGLKELLDRRALILAEQKLSAPFYWDLWGNLEHLRKTYAQWLAEHIFDIPNDDEEQEVESDSDISWDTE*
Ga0114339_10533934	F041599	AGG	MVELRSGTNTGGQEPSTTQGIDPNIPEDIEVVGQGEQMANQGAQMMDPTNQQGQPADAAQGVYVGGTYPATLTRAAQGTPSYRPPQFAFTTPPVRPLQEEFKSTKSHEEGDGSSTESVKPLPTPRSTFTFEAPMRPLAVARNMYLDYSAVQSIKFYNKGVEKLPGEAFNGKLLLTWLIQVQDKANMFTWTSILTINGRPLTQNFTKITKEEVRAHAQVYQDRSMREAQNSE