Scaffold Ga0114339_1040463

Overview

Basic Information

• Taxon OID: 3300008106
• Scaffold ID: Ga0114339_1040463
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2415
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003887	Metagenome	463	Y
F048760	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114339_10404632	F003887	N/A	MRPLDVARNMYLDYTTTQSIKFYNKGVEKLPGEAFNGKLLLTWLIQVQDKANMFTWTSILTIKGKPLTQNFTKITMEEVKAHVQAYQDRSSREAQNSDMLIQCLKASITRTVYNKIYLQREKYIIFRKNTLEQVEDGVCFLKTIIDNYHSNTRSSTKQIRKQLATLNHYMRNVAKSDVSKLCEHTRELMFELNAADETTNDLLANLIEAI*
Ga0114339_10404634	F048760	AGCAG	LTWDYKTFKDFKLWTWLQATKALDLPISEQAEAWFNYFSIESNQIKAKELLDPFRKEKQKEFDFLLQEEYNLVFPTASCISSVRFNVPSGDPFEDLEINKTLQDSRLIPLTQAGEPIRKRFIRQYLEDRLKEHLALGGLKELIDRRPLILASQKLPAPFYWDLWGSLEHLRNAYQEHLAEDLFGPSSDEEEEGEDKERTTTAQYFGILSRLNPLIFC*