NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111541_10249302

Scaffold Ga0111541_10249302


Overview

Basic Information
Taxon OID3300008097 Open in IMG/M
Scaffold IDGa0111541_10249302 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)752
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-0.4612Long. (o)-23.033259Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012398Metagenome / Metatranscriptome281Y
F054355Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0111541_102493021F054355GGAGGMNIKSIFGSIGDVLGGIAGVLTGLVSISILSTIVFGSGWLGTDVIANISALVGSFLSGGVTGLLVLSFF*
Ga0111541_102493022F012398N/AEGVVTEEGSQYWSSRFSYGVSFAGIDSKFGLSLNSNEAQLVDVSLGNDLFTTSFEYDLSSEADGAYWLRGVVTPPQAQGAFLLIGLNSDEVVTYGVGYKCSDNMKVVSEFTSGLKDADGNEIENDFSIRASYSF*
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