Scaffold Ga0110929_1041262

Overview

Basic Information

• Taxon OID: 3300008072
• Scaffold ID: Ga0110929_1041262
• Source Dataset Name: Microbial Communities in Water bodies, Singapore - Site MA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1136
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies → Microbial Communities In Water Bodies, Singapore

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004546	Metagenome / Metatranscriptome	433	Y
F032098	Metagenome / Metatranscriptome	181	Y
F034149	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0110929_10412621	F032098	GAGG	VENSDFPYHTLDPTTSWYEWICYCEICHQLGIKDQPSVQRFMRYNAY
Ga0110929_10412624	F004546	N/A	MEHTEEFPFDQFPYKLVHKDGKEVRKCYFQSEDHRKQHIDRYKLKKKDIQLSYKYDK*
Ga0110929_10412625	F034149	N/A	YIGNIVFRLTNEDAIGRVKYYMEENEELRVAPDKDLLDSYYKDLHFDFGLDNEGEGVVDKEDGQKYYPVNIINKSGIKEEDVFIYAYRRNMMPLHDFIQYHEKFDVYSMREYFQDTPVVRGIIQYLQDMKDGKENPSRTVYYEQFLNTLENLCWWWD*