Scaffold Ga0108970_11277225

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_11277225
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 878
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F091314	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_112772251	F000903	GGA	MITRVDEIQCMVSAIEHCKDRNADHPTRFQKNLSWFEYVAQMAESMMAEWVVARRLGYDYQPGITWDKSKADVGQHIEVKWSANPTSNLWIQESDREDRDIAVLVTGHSPRMAIIGWMPVAIAKKPRYKNTSQNNWTVPQVNLQPIETLIRSNYA
Ga0108970_112772252	F000403	AGG	MSDYMEIINPQTRTAKLMYQGVIIEEDKLEQCDKCSQLMKFDKFGYQKGYDRTDNIIWFCGRCR*
Ga0108970_112772253	F091314	N/A	YQTREEAEEIKDTAWTAETVPGCSHGSMRWNQSKPDAPKAWAGYFCSDKIKENQCKPRWYVLTSDGTFKPQV*