Basic Information | |
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Taxon OID | 3300008055 Open in IMG/M |
Scaffold ID | Ga0108970_10552101 Open in IMG/M |
Source Dataset Name | Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5598 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass |
Source Dataset Sampling Location | ||||||||
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Location Name | Netarts Bay, Oregon, USA | |||||||
Coordinates | Lat. (o) | 45.394187 | Long. (o) | -123.939629 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012967 | Metagenome / Metatranscriptome | 275 | Y |
F016938 | Metagenome / Metatranscriptome | 243 | Y |
F022591 | Metagenome / Metatranscriptome | 213 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0108970_105521012 | F012967 | AGG | MTNEYRRSVLAPRARVPFDPRNRKHMIDFAKFVKYNSWTNGCSYFLEDPFTDIPTMIRAKIADYTLSRLVEKV* |
Ga0108970_105521015 | F016938 | GAG | MKKQTETLLSEAIDLVNGVDHVLANTMTQYDLSAKNCYDLAEKLERACHALLVVGDRKTQQDLNKIPMGEGVPF* |
Ga0108970_105521018 | F022591 | AGG | MKYENTVKIGDVVKSLDFVGVNDCFYVGLVVGISKMDGTFRAKTIKRVWQGQLDKKIPSDFFTAPLLGNSFFDDMAEEKGVDPRVQVIA* |
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