Scaffold Ga0108970_10533820

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10533820
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1190
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F081348	Metagenome	114	Y
F103267	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_105338201	F081348	GGAG	MFEKIPYGVKVRVRGNEKDGFIAEYAICTTRFLPFLDNWGLISHYTHTPYTKQDTFPTFELAKEAAMKQYDSWISFYKRDEETKRIAKAQRKIVWKHP*
Ga0108970_105338204	F054874	GGAG	MVKESKGGTFAPADMPLIKNALFYYKDMLVATEDSERNTSDELAKVANLLHRIGRIA*
Ga0108970_105338205	F103267	AGGAG	MNVELFAFPTMENPKAVEDTFCDLLNAKRRGESLPVEALDWMDTANNWLMESK*
Ga0108970_105338206	F047683	N/A	IMTLTVEQIESTYAVPADATRQNYYPVLAYWIPIELREQVLAAYRETNTRIRLRYRGPRSVSIGREMTRNDKTTYLRSRHRAMQDCLIADATHFTVYDYTSR*