Basic Information | |
---|---|
Taxon OID | 3300008055 Open in IMG/M |
Scaffold ID | Ga0108970_10395296 Open in IMG/M |
Source Dataset Name | Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2271 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Netarts Bay, Oregon, USA | |||||||
Coordinates | Lat. (o) | 45.394187 | Long. (o) | -123.939629 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005089 | Metagenome / Metatranscriptome | 412 | Y |
F042896 | Metagenome / Metatranscriptome | 157 | Y |
F073464 | Metagenome / Metatranscriptome | 120 | N |
F092055 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0108970_103952961 | F005089 | N/A | MNINDLFQSKKLSETLALENYQQRNGVIDYRLDGVCNHYFSKYDLQGNRDGEVCLTCKVSKTVKGQMRYTWQIDGKRIAEKQIPAEFN |
Ga0108970_1039529610 | F092055 | N/A | MNTTQMDQIFHYHTDWKEGKVNQMWIQQLGDADCGNLYVAISYNPHKDVSMVMSKPRTSYHETLQWVRKFCGSFSILP* |
Ga0108970_103952964 | F042896 | N/A | MTSTVLVKFSYEDRVSEEVPIQVKLDLSKNSNRKKLLNRLLKSNPNITEVSLIK* |
Ga0108970_103952969 | F073464 | N/A | MNTKNWVIKIEIAIDENSHPRKFVPNAIAECLNFGDGEDIIDYEFICLD* |
⦗Top⦘ |