Scaffold Ga0108970_10277275

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10277275
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1783
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006986	Metagenome	360	Y
F020354	Metagenome	224	Y
F021759	Metagenome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_102772752	F006986	N/A	VTAVLVIWHDAHSGSESWIPISSLDTEPAVVNTIGFLLSTTDGGKPEHVTVYQSRNEDAIDHVLHIPVKMVVSIKVLMDLEINTPDR*
Ga0108970_102772753	F021759	AGAAGG	MDAGLAVVFAAVVAALGGIAVAIIQMRNLANENRTDHAIVQKRLDTVIDMVGKTSAKLTSHLDWHINSSTKEPRKDLKVKQVATRKKK*
Ga0108970_102772756	F020354	N/A	QIVFAKLRNELFALGFTLGASAITIMTLSGSVQTWALIFTFLSLALHLAGVLTKGEEDGSGPED*