Scaffold Ga0108970_10268553

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10268553
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32773
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (44.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022402	Metagenome / Metatranscriptome	214	Y
F024297	Metagenome	206	Y
F030068	Metagenome / Metatranscriptome	186	Y
F087138	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1026855317	F030068	GGA	MEPQRIRDIKESLDGMSMEELQQMSDNLNDLIQVLVTRQVAIEDTILDRLETAFTR*
Ga0108970_1026855335	F024297	AGTAGG	MQIIQTFPKGTTIEFGEDQHGNQVHRICTPGGSMCRFAEPYHCALTYAEQYEECYGITPES*
Ga0108970_1026855358	F022402	N/A	MTNWLWRSIVGCATAIMVVSVLQWGACRFYVLPAVWPWYAKYVGTDQSEKIDPAPMGCTDVDARTITVMMGVLTTLISLSRNAE*
Ga0108970_102685539	F087138	AGG	VLTLTKPKLIGCVSSDSGSIAVVDPCHLGVSESGSVRLPAWNLYTQVDTEVGDGEFTVYEERDRHGRLRRIVIELE*