Basic Information | |
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Taxon OID | 3300008055 Open in IMG/M |
Scaffold ID | Ga0108970_10268553 Open in IMG/M |
Source Dataset Name | Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32773 |
Total Scaffold Genes | 59 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (44.07%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass |
Source Dataset Sampling Location | ||||||||
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Location Name | Netarts Bay, Oregon, USA | |||||||
Coordinates | Lat. (o) | 45.394187 | Long. (o) | -123.939629 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F022402 | Metagenome / Metatranscriptome | 214 | Y |
F024297 | Metagenome | 206 | Y |
F030068 | Metagenome / Metatranscriptome | 186 | Y |
F087138 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0108970_1026855317 | F030068 | GGA | MEPQRIRDIKESLDGMSMEELQQMSDNLNDLIQVLVTRQVAIEDTILDRLETAFTR* |
Ga0108970_1026855335 | F024297 | AGTAGG | MQIIQTFPKGTTIEFGEDQHGNQVHRICTPGGSMCRFAEPYHCALTYAEQYEECYGITPES* |
Ga0108970_1026855358 | F022402 | N/A | MTNWLWRSIVGCATAIMVVSVLQWGACRFYVLPAVWPWYAKYVGTDQSEKIDPAPMGCTDVDARTITVMMGVLTTLISLSRNAE* |
Ga0108970_102685539 | F087138 | AGG | VLTLTKPKLIGCVSSDSGSIAVVDPCHLGVSESGSVRLPAWNLYTQVDTEVGDGEFTVYEERDRHGRLRRIVIELE* |
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