NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0108970_10132548

Scaffold Ga0108970_10132548


Overview

Basic Information
Taxon OID3300008055 Open in IMG/M
Scaffold IDGa0108970_10132548 Open in IMG/M
Source Dataset NameMetatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4529
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → Pedobacter steynii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location NameNetarts Bay, Oregon, USA
CoordinatesLat. (o)45.394187Long. (o)-123.939629Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014726Metagenome / Metatranscriptome260Y
F014837Metagenome / Metatranscriptome259Y
F016141Metagenome / Metatranscriptome249Y
F024095Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0108970_101325481F014726N/AMGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPSAGTTELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIAVNDVDGFTRANQATLDTRAIASDYLGGFVQAGVLNFSVGARPFATVVKPFQYAPPPGSPLDLANTYVNQISAAPVPAAGAAQVVGVPWVTQTKMRSNVYFTDPNILIEAEQQFNVKLSFPSGAVPVLATNVVNDSTNPLKVGVILDGLLLRPVQ*
Ga0108970_101325482F016141AGGAMTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFTTGTNFTYRGYTALADSAMEKLQTVLNNGVLEISFAQKLYYQIARPFIQCPAGFGIDVQSLASSRTGNAAETQPEGTNWLARPDYRATAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTANGTQTPSIELGLIFDGYVIRPSQ*
Ga0108970_101325483F024095GGCGGMDNTNSLPFVYVVTATLGAAVGATSSTTLIMQADSRFELMGIFGTGGTAATTEDSLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAATNNITLALHGYKIIL*
Ga0108970_101325484F014837N/AMIQRNINPKPRFVTLTASVPSTGAFVGVPLATLWRASFFRFPQDSIIHYISINSTFLANGAASQVIGAIAYGQTNDNIGFSLNAGFENTTDEIIWRDELLNPVAGVVTADKSTQIMMNEYFVHTGSGVGIYVNGINGNANINATIAFNPIAEWVNFREPTTGARI*

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