Scaffold Ga0102893_1082459

Overview

Basic Information

• Taxon OID: 3300008052
• Scaffold ID: Ga0102893_1082459
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1553A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 961
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.1867
  • Long. (^o): -123.8835

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009960	Metagenome	310	Y
F042325	Metagenome	158	Y
F067472	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102893_10824591	F042325	N/A	IQKIEGKKIHTPHAHWVVMGIEERKNDYIIKVRFEYGTTSGVKHPKYVNFKLLRYNEFSSTLNEWRMYNDQDNGYTTLTKGLLTLKMFVGILGGQLHSFSN*
Ga0102893_10824592	F009960	N/A	VVNYIVSVIKTNNMLTIENIHKINGYSLVVKGKGYYFKGWDNTTNDVTTFALAAVSPSNPLIRITLYKKGNMVFDDIQKKDCYVYGIWVDGLLFHYTKERLNTPSEFRNTIEQILNAI*
Ga0102893_10824593	F067472	N/A	MLTIENIQNIEGTEFQMSSGQKYVIGIVRSWYDHYSFGVFPLKENNVASIKDGIIYKLHRTKKSRRGYKLVAPQMSWQPYAKPENLTLDNFVLELHIQTGLLNAYNRK