 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008050 Open in IMG/M |
| Scaffold ID | Ga0098052_1051615 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1771 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001034 | Metagenome / Metatranscriptome | 798 | Y |
| F003481 | Metagenome | 484 | Y |
| F006447 | Metagenome / Metatranscriptome | 373 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0098052_10516151 | F006447 | GGGGG | MTLFEKLAALVGNRQIPALAIPSLPRYRISFANAAVVKIVVACILVSGLAVGVGLYFAVKDVVNATYNWPEPATYDVTSAGLQTMGTKNEDYEDGTESQTLSIRLADGVRISTLRIKDVDLGRSNNTKAFDISPYTTAVTGAQAYLWVGNLTITDSSFPTFDWQNSEVGTLTTGMLCDGHTMSATISNSPNDLELSSERQSSVYEVDGSIVDKVQLHITGNSGAYVNHLILDNVDAWKGSLSFERMKIGTATMNNSNRVGDGSGVDSASCVIQPSVSARVINDTMQDRPITVR* |
| Ga0098052_10516152 | F003481 | AGG | VAELDDIREELAAAREELEKLKTSEDKSPNRVQMTSADIVKLIVACPVVFTWLFLGSRIIISATTSQHVLDNVEPLLTVLSILTIPVTGILQNLFSVTGDKK* |
| Ga0098052_10516153 | F001034 | N/A | YQTTAPIGPQEPIPAGVHDIELSWDRKRGYMRVIIDGTTWHFKEFLGKAQVTGCDSKRGRIYLRAMARIDGETLTVYRDPSAPYHPEVDGERRESTHNRLCYRRESQEWRLRDERMPWEHPEALKFTKDYVGDLNAEWHMADSVAHIYHNGYAIIDENDVAHLYE* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |