Scaffold Ga0098052_1041823

Overview

Basic Information

• Taxon OID: 3300008050
• Scaffold ID: Ga0098052_1041823
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2019
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013467	Metagenome	271	Y
F036024	Metagenome / Metatranscriptome	171	Y
F062176	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098052_10418233	F062176	AGG	MTYEVKITTIDKNLTYVVKAENVLEAEAEAIKKLGKDIPKDYVTAGQFNVEHIEHIPDA*
Ga0098052_10418234	F013467	N/A	MTGYGTLRNWVWCEDCLEWKDADEVSFVGIEEDSYGKDVLTFDCDKCKNENKNNIVSSPTRPRG*
Ga0098052_10418235	F036024	GAGG	MGMSIEYTMARIGDEDSFLELDEATRICQAKISEYISEVKLEDGEEAIDDYSWHIVTPERFEQDWENDDRLKKTAEIKAKYKKWAKNNRVLFLEVDWN*