Scaffold Ga0102922_1019672

Overview

Basic Information

• Taxon OID: 3300008021
• Scaffold ID: Ga0102922_1019672
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1569A-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2000
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2861
  • Long. (^o): -123.7318

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F009682	Metagenome / Metatranscriptome	314	Y
F059659	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102922_10196723	F001840	N/A	MKEEKDSAFLICDCFSHGLLVEKFEGEEEVCLSLFERGMDGRILRWSERLRWCWQILRYGKSWSDFIILNAENQKRLKEFLENK*
Ga0102922_10196724	F059659	AGGAGG	MGMYNSVDCQYPLPMPEDPKGYTGSHGFQTKDFECALDVYIIDKDGQLLIERRDSEWIEGDPNGKSFLDKMGHVKTIKTWLEPLTNTCTIQFYDFIDSNKTDYDYFITYEAVFINGKISSVKIINFEANENAKRKIRDAEFAKKNKENYQFRQTWQYKYFVKPYNRSVSFIFFKTIKVLSFLSTTLYKIERNIRIE*
Ga0102922_10196725	F009682	N/A	KTPNEKILVQSDDLKFDGKNIIIPSYYDGVICDYLNRVDVKGMDDADHQDYLAFRKFFEDIMNYKADQGGN*