Scaffold Ga0075480_10118173

Overview

Basic Information

• Taxon OID: 3300008012
• Scaffold ID: Ga0075480_10118173
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1469
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070153	Metagenome / Metatranscriptome	123	N
F104991	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075480_101181732	F070153	AGGA	MNKEKKMANCFITKEYSQFKKTKGNRPISLSHVAKIKKAIAHKDLKLPILVTKSMDIRDGHHTFQARKDLGLEIYYIILDSNDAFDMALLNSNRSGWNYNDYLNFFCTYQRKDYMILKSKVKQYEMPIQEAVAIFNNQVNLKSNTMDDFKEGRFKIPANGLITFDRIASEMQYINNILDNSKTLKRGFIRAYLVADKCPKWDFARFKAAMKSKGAKLLGAISTEDYISQFQAIFNTGLSANKKIRLSRFFEDKEYENKEEIRIH*
Ga0075480_101181733	F104991	N/A	MSWRNTQQRMIEELNTKIFFYDRCRKIHEEYSSMDIENTNYIQELKNRERYGPHDFNGSLIEKKKYDFLVNQGKILN