Scaffold Ga0100396_1069547

Overview

Basic Information

• Taxon OID: 3300008011
• Scaffold ID: Ga0100396_1069547
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1629
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088268	Metagenome	109	N
F093254	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100396_10695473	F088268	GGAG	MPTSVEIAEYLASEGLVDIQPWHDAEAISATDPLTRSQFCAGFDESLDTIAANLRARRARFAHPLTPGDPSHD*
Ga0100396_10695475	F093254	AGGAGG	MEHCTVSCYHETKVALRQRTEGDFARLAREEIDALSLARWREYPAWARYEPIVESTVPEIIYDAIHRDGPAASCSYETLRHAVLDYLEAGTRDDWDRT*