NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0105748_10352054

Scaffold Ga0105748_10352054


Overview

Basic Information
Taxon OID3300007992 Open in IMG/M
Scaffold IDGa0105748_10352054 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)631
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.235Long. (o)-123.9123Alt. (m)Depth (m)10.3
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098812Metagenome103Y
F105155Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0105748_103520541F098812N/AMNELTCIFETSEEFQSFKNKVDEKNFYNSFLPMPEILVDTQSPHIAPGDFINGVNKSKGTNFLTLESIALSSDEWDAERAKSIIKNIKAFERTGYHDWHSWCMDNWGVKWDAVNCKSK
Ga0105748_103520542F105155N/ALKTNVAKQLAAEIKYLEWDLVTFNFYHKSYKGYNFYKRNISLNYWQYTVSDDITSCTFKVYEKEAKTNAKLGNE*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.