Scaffold Ga0102924_1004769

Overview

Basic Information

• Taxon OID: 3300007982
• Scaffold ID: Ga0102924_1004769
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13467
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001558	Metagenome / Metatranscriptome	671	Y
F002231	Metagenome / Metatranscriptome	580	Y
F003233	Metagenome / Metatranscriptome	499	Y
F018460	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102924_100476913	F003233	AGGAGG	MKFRQILTAIVILGTVWHTAAAQPKKRNIQTDAPRPESVLAGTSVPSSPVLYDLIAVRPEMPLGPQDVLKSYEIAMSLVADKTSADFSVIVQAQQTNQITREQAEYFLQQRYQMALMQYQVLSALHDVLKHDIDEAAGQQAKQSLKATSSEVLMVPFPDSTPASR*
Ga0102924_100476914	F018460	AGGAG	MLRKLIPVFTLCLLTFPVFSQTTSKWQIAAITEVKPHPAAGEDTSDPITYDISVKVGSTIYLVRYTTPLGEIAPKYATGHELLVLVGKTTITYNDMLGRAYQVPIESQKPVTESKQTK*
Ga0102924_100476916	F002231	N/A	LLDDTQRMAQRKGRETGRPKVMVEANIHIRPDRFGMNDMNEVIWEEDGKDTPGVWEGKWQVDNARKIKFLSGEKQPWQPLKYENDLYHCGPRERCIPSPAEQKLSIAEDYAFGAATSRNIEGRFLAALIKGEPEAREAWTAIAQYNHFLVEHQNLYHQTEPVARIALLSAKPQNRLAAEFLKQSVFFETKVLAHLGKGVPLDRFKVLVMSADLPKLSPEQKAQLNTFTAGGGFIINAGKSKSGIVARAEAAAGGTRLSLEPHGYLLGQLTRKPDGRTFILHVLNYDHRVPAENVKVRLDMGGLVQDLSRWEVKVLSPDTTQSHLTDLIMQEGVCEFTLDRIEHYSVVVLSARSGP*
Ga0102924_10047692	F001558	GAGG	MLRVETQELDGALVCRLEGRFTGEGAEEVRRLLTHCDSKLELVVDLTDVMFIDGIGEEVLLFVKRLGAQFVAETSYSRDVCERLELSLADKRKSNRQLPVKSNGNEQRLRRL*