Scaffold Ga0105747_1047892

Overview

Basic Information

• Taxon OID: 3300007974
• Scaffold ID: Ga0105747_1047892
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1254
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9163
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007310	Metagenome	353	Y
F013084	Metagenome	274	Y
F048994	Metagenome	147	N
F103250	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105747_10478921	F048994	N/A	FGMMNLYVNGVCVVSTNTMAGIKHAMKRYNLQGYTMVAAE*
Ga0105747_10478923	F007310	N/A	MKVVYWNNSERWFNHHHYETLIEDITGFHLRESLCPETVKYMAKRLSDTKYQRRFKTLYTIYENEYNALVEKFIYQADNNGKIEVA*
Ga0105747_10478924	F013084	N/A	MGIMNVIGLMQEARETALYRGHNVKNWLVLGNDCYSLECSDCKMTCMVKENPLPNEIDLGGEILALNCVKPEKKKRVKKM*
Ga0105747_10478925	F103250	N/A	IEINTKYGWASARIGRYSNGNLGIQLFQDGSPLAKISANLIDTVLEPREFHFNSNDAGSMKEDVLKSGHFEDTGKTNFSGFCEYPVFKLKDHVEVVEG*