Scaffold Ga0105746_1004363

Overview

Basic Information

• Taxon OID: 3300007973
• Scaffold ID: Ga0105746_1004363
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3871
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9153
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F045754	Metagenome / Metatranscriptome	152	N
F054861	Metagenome	139	Y
F073554	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105746_100436310	F045754	N/A	MNIDESKPWPFPSHFGDAHEDDKLKADCLALLQDFTAFQLRGEIYYGYLDVRALKVIEELRKDRDNEAKPST*
Ga0105746_10043635	F054861	AGGA	MNTKLLKHTRELFKSYDVPEHVRRSYRLKWVRSIRHLGDKWLFAKPITRKENL*
Ga0105746_10043636	F026266	AGGAG	MVETITFHFVGALEDSGAIVDVQCQIDEDGDCRDLDSAMYQGIDVLEVISNDQRENLQWEASKKYKAENYEQLTIAHDHEHALEAVYGLSKPSFNIR*
Ga0105746_10043639	F073554	AGGA	MSIELFDDDVDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVAEAVLTKAHNGHIAVQEDPFAW*