Scaffold Ga0110931_1204499

Overview

Basic Information

• Taxon OID: 3300007963
• Scaffold ID: Ga0110931_1204499
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 589
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium TMED38 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F007346	Metagenome / Metatranscriptome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0110931_12044991	F007346	N/A	QLSQAVKWSGQDIFEVAAAAFEDANYHSFNEVFYAAWTEYQKELQDG*
Ga0110931_12044992	F003073	AGGAG	MGKKLHNMTHDERMEHFENEREKERINRRNRIAKLSMDQRAAVIDINKLLDKVLDVALYPDMGGIRMVSAFDLQELSDAMDTLQWQFNLRD*