Scaffold Ga0102907_1012097

Overview

Basic Information

• Taxon OID: 3300007962
• Scaffold ID: Ga0102907_1012097
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2548
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2022
  • Long. (^o): -123.941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037743	Metagenome / Metatranscriptome	167	N
F091359	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102907_10120973	F037743	GGA	MSNDVNFFESNEYEDRYIEVALIDAEHNEYIYWVSLNLIPGGEDIEDNSIKIAKAKHASLKLPSIPEDNDYEEFEPKASAYTPFSRNGNEMTFIT*
Ga0102907_10120974	F091359	N/A	MQYFSQIPHFGFCREGEGRVVYVLSRELAIGEFNVIEAIANKSLGKGQWSEYDPSIVETANYLIEDEQNIYGLLSINESSDLLHTFFMELLKKNIKVISINFESSAVKTINQIDNSFIKSIDKNSYIFAREYDHINSY*