Scaffold Ga0099850_1005904

Overview

Basic Information

• Taxon OID: 3300007960
• Scaffold ID: Ga0099850_1005904
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5683
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F043905	Metagenome	155	Y
F097236	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099850_10059041	F001806	N/A	RQKRVEALEAIKNKAMKMAADGADSDSVRSFVTEAKTDLAYELPDEEAFTKAARATLAYKRKKG*
Ga0099850_100590417	F043905	N/A	MQFQLPSNLQTELLAYDPTLKVLAKEAKAKTTRKAKYPLGNIPHLIPHNVVRESDQQAAIDHINQQKAPDRYRVFTTPVDVATPQARLKVIAILYHYEQVWYAAWLPPKKEKSPYVYGHAYAFKNTAAAAKVAPTWIWNSKDKCIKHTIGRGVQTFTFSETITEEDIKASPDSGYKIQQWQAPNLYCQKGYQIRDHAVTPFEQSLKEDIPTWDDCRGIFDRIRCKNIFDAAEIPKMMAEFIDPLHGLTVDGLVA
Ga0099850_10059044	F097236	GGAG	MIDLTTGWVQHPGVYGGWHLEYVDPVAGFDISIVTGPKGSGLMGTIAPGQPTTYEAWLPGLSNPTGYLTLDEIRGIIMYLREKYRDDTMYMD*