Scaffold Ga0079306_1000015

Overview

Basic Information

• Taxon OID: 3300007959
• Scaffold ID: Ga0079306_1000015
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanotroph_Enrichment_5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 331505
• Total Scaffold Genes: 349
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 272 (77.94%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3769
  • Long. (^o): -82.5172

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075038	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079306_1000015147	F075038	AGGCGG	MRTPEPAQRVRDMSSTWDLRKGKVKVVEDASTASLVVIARDLKDRDEKIAVLEEVVRRLKA*