Scaffold Ga0105741_1088872

Overview

Basic Information

• Taxon OID: 3300007956
• Scaffold ID: Ga0105741_1088872
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 755
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → Candidatus Poseidonia → unclassified Candidatus Poseidonia → Candidatus Poseidonia sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2335
  • Long. (^o): -123.9142
  • Depth (m): 15.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030388	Metagenome / Metatranscriptome	185	Y
F049527	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105741_10888721	F049527	GGA	MTTQATSITTGNPSMSKVFTKSATDDVWSGNVLLDSIAGQSIGILIPGAALTFAQAEYEAGLMAWRLQNAQSLRVTSRG
Ga0105741_10888722	F030388	N/A	MFNTNLIEFATGRVDGKYKPGADGSSVLTLPELLGAGAGGIGGNYGSQTGYNSLSAVLKTNLEKNWMNIAIGVVLIPVIAKTATKLIRKPVILPANRMLKSVGLDVKL*