NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105741_1088872

Scaffold Ga0105741_1088872


Overview

Basic Information
Taxon OID3300007956 Open in IMG/M
Scaffold IDGa0105741_1088872 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → Candidatus Poseidonia → unclassified Candidatus Poseidonia → Candidatus Poseidonia sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.2335Long. (o)-123.9142Alt. (m)Depth (m)15.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030388Metagenome / Metatranscriptome185Y
F049527Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0105741_10888721F049527GGAMTTQATSITTGNPSMSKVFTKSATDDVWSGNVLLDSIAGQSIGILIPGAALTFAQAEYEAGLMAWRLQNAQSLRVTSRG
Ga0105741_10888722F030388N/AMFNTNLIEFATGRVDGKYKPGADGSSVLTLPELLGAGAGGIGGNYGSQTGYNSLSAVLKTNLEKNWMNIAIGVVLIPVIAKTATKLIRKPVILPANRMLKSVGLDVKL*

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