Scaffold Ga0111546_101902

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0111546_101902

Scaffold Ga0111546_101902

Overview

Basic Information
Taxon OID	3300007907 Open in IMG/M
Scaffold ID	Ga0111546_101902 Open in IMG/M
Source Dataset Name	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Liverpool
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2059
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Source Dataset Sampling Location
Location Name	United Kingdom
Coordinates	Lat. (^o)	54.9632021	Long. (^o)	-1.6348029	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006143	Metagenome	380	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111546_1019026	F006143	GGAGG	MTEEQNPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGAT

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