Scaffold Ga0111484_1005742

Overview

Basic Information

• Taxon OID: 3300007896
• Scaffold ID: Ga0111484_1005742
• Source Dataset Name: Microbial communities from sediment of the River Tyne Estuary, UK ? Live_176d_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Liverpool
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2841
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Source Dataset Sampling Location

• Location Name: United Kingdom
• Coordinates
  • Lat. (^o): 54.9632021
  • Long. (^o): -1.6348029

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013592	Metagenome	270	Y
F088833	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0111484_10057421	F088833	N/A	SLESLMKFNVFLSIATLVSVAGATVADYVLMAWLWI*
Ga0111484_10057427	F013592	N/A	MRIDMPLAPGLELIEEILFDAPTLAPLRSLHPLIRIPLIAYQAADIVSEELARRTIEAGGVGAIDIFTPEIRRYEDTALVGMGGMII*