NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111032_1082622

Scaffold Ga0111032_1082622


Overview

Basic Information
Taxon OID3300007871 Open in IMG/M
Scaffold IDGa0111032_1082622 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf. Combined Assembly of MM2PM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAarhus University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1036
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location
Location NameAarhus Bay station M5
CoordinatesLat. (o)56.10555Long. (o)10.463333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003196Metagenome / Metatranscriptome501Y
F024810Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0111032_10826221F024810N/ANIIPANTAFILDFAFIQPVFTNIPGYGTVFVRDIDQDDSAKIAKAIYMEMGYDFGPPSYHVKITDVA*
Ga0111032_10826222F003196AGGMQISKQVLIDVSEDASNSTGVKTDGLLLSGIVFPTGMVGANVTFDFSFDGTAWKDVVETNNTEVTYVVSADNVVRVDPSGWAFASSGFLRVTSDGTETTDKAIQLIFKSS*

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