NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111032_1049394

Scaffold Ga0111032_1049394


Overview

Basic Information
Taxon OID3300007871 Open in IMG/M
Scaffold IDGa0111032_1049394 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf. Combined Assembly of MM2PM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAarhus University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1017
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Henriciella → unclassified Henriciella → Henriciella sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location
Location NameAarhus Bay station M5
CoordinatesLat. (o)56.10555Long. (o)10.463333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016899Metagenome / Metatranscriptome244N
F074739Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0111032_10493943F016899AGGAMFREYMLKGTMNPEVQAVFKAAADINNGVFSLKEAAQHYKVHPAVIVQFISESAEYDMIFSKRGDNDSN*
Ga0111032_10493944F074739GGAGMNVFTGPNDLLHGDEHLEELEDWELRERFFNALRDLTEAADTMEKLKNPKWTPYPEDIEALQDTLEELKYSLK*

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