Scaffold Ga0105744_1170498

Overview

Basic Information

• Taxon OID: 3300007863
• Scaffold ID: Ga0105744_1170498
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 545
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2335
  • Long. (^o): -123.9142
  • Depth (m): 15.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033503	Metagenome / Metatranscriptome	177	Y
F065117	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105744_11704982	F065117	AGGAG	MKKKIKNKKTKVKMTVDGYYTDDNGFWTIYKTESGMTVMKKEKKDNDN*
Ga0105744_11704983	F033503	N/A	IQLRKDIMKLALAESATDCTIMCGTLFAKFNVSIHEQMAKNLKTTLQTFFDNRKKNDCHVQMSGTLPDNEYAYDFMPIVDFRHNGVGV*