NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105744_1170498

Scaffold Ga0105744_1170498


Overview

Basic Information
Taxon OID3300007863 Open in IMG/M
Scaffold IDGa0105744_1170498 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)545
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.2335Long. (o)-123.9142Alt. (m)Depth (m)15.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033503Metagenome / Metatranscriptome177Y
F065117Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0105744_11704982F065117AGGAGMKKKIKNKKTKVKMTVDGYYTDDNGFWTIYKTESGMTVMKKEKKDNDN*
Ga0105744_11704983F033503N/AIQLRKDIMKLALAESATDCTIMCGTLFAKFNVSIHEQMAKNLKTTLQTFFDNRKKNDCHVQMSGTLPDNEYAYDFMPIVDFRHNGVGV*

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