Scaffold Ga0105736_1006302

Overview

Basic Information

• Taxon OID: 3300007861
• Scaffold ID: Ga0105736_1006302
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1871
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9163
  • Depth (m): 9.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010898	Metagenome	297	Y
F032550	Metagenome / Metatranscriptome	179	N
F033698	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105736_10063021	F010898	N/A	MDKINIYINSKNRDLNESISNFTVRIPQNLLRLEQGEHFSLNVNGFYCYNSWFNCIDGFNNEFQIIIKNMNDEITETYNYKLNDGNPNVNDVKTNLNGLLINKVLVSYDKQRNKFIFKRSLPVSTQNYTMYLNII
Ga0105736_10063022	F033698	N/A	MKFLRYKQAARLTFMGIDDEYNNVASSYYNTKLKLFNNTEINTKLLRFRINNLHNIKLSQNAKLILESVYLPCVFDNNLDIKHDTNIVLRLKNISDSKCFNSSNDNESSPIIFSHSVQSRPEPIVRTLTTTLAGAISTYNNQALNINYYNSGISFFNPSPDKLYNFTIPNTFTNNTIFEFEITYEMNAGDNIILADDSDIFYKFQCSLIICDEEEQDLISNDSNTVDFDKFKPHFPLKKSN*
Ga0105736_10063024	F032550	N/A	MIIEENLLGWNNIPVKSKEVVYPQSKDEKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLIPQRIILISSTANSDSNTIFKSLKNLDWENDVIENYEDDLLKIKMEELKYDLDHSKDYKLYKEAWHNFVKCKSIDDLSDD