Scaffold Ga0105735_1041577

Overview

Basic Information

• Taxon OID: 3300007860
• Scaffold ID: Ga0105735_1041577
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372A_3um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 890
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9163
  • Depth (m): 9.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F023340	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105735_10415772	F023340	N/A	MGIFQGRQPLLETLMLPAWGYMPLWSKDKLTLVQIFTDTATEEIVKVTGATRQAPWLAFASITEVEQVD*
Ga0105735_10415773	F004670	N/A	DPETSRQVNPIRVGTHRAILLKQYFDATLGLTDEEAGARAALAGHEIKGYWKRCSDLRTLGLIQDLGVRRAVLSGSQAIVCAITQTGLDMVRGWA*