Scaffold Ga0104324_124191

Overview

Basic Information

• Taxon OID: 3300007820
• Scaffold ID: Ga0104324_124191
• Source Dataset Name: Permafrost core soil microbial communities from Svalbard, Norway - sample 2-12-2 Soapdenovo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Princeton University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1755
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location

• Location Name: svalbard,norway
• Coordinates
  • Lat. (^o): 78.11096
  • Long. (^o): 15.55294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052960	Metagenome / Metatranscriptome	142	N
F061635	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104324_1241912	F052960	GAG	MSFRIGIPGYLKAVTAFGALLLLAGCGGGSSTAKTSDVEKAILVRSPDSSQAICERHGSYQGKTLFRCKADVATSVREMRPESSCYTFEHGKLDNVTRHVSC*
Ga0104324_1241913	F061635	GGA	MRKLILALIVSLGLLAAAPAQAGIPDLYSGSWPAKLMPSNEALGTITWVPVTEEWGRGVLNQPWGGAPFTNCPSKGQTRFFLGRYGSGGKLIACTVGTDGRRLHGRYDGGGGEFRPGSFDVSLITAPTDEDQEFEGVYVEDGGITTDWCGELIASSRPDVLAPHVSALPSFGQAGKPARLRFSASDDRNLARVQLTIRRAGKIVGSVTSAMRRVNGQPSWLLCRPRKHLSGTFALCARAWDRYGNASARSCSTLRLK*