Scaffold Ga0104322_146456

Overview

Basic Information

• Taxon OID: 3300007819
• Scaffold ID: Ga0104322_146456
• Source Dataset Name: Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Princeton University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6120
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location

• Location Name: Svalbard, Norway
• Coordinates
  • Lat. (^o): 78.11096
  • Long. (^o): 15.55294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003572	Metagenome / Metatranscriptome	479	Y
F026136	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104322_1464564	F026136	AGAAG	MKRTRIIRLALLGSVLVAVPAQASAEEIPSPTLKVKAAAVPIPGFPGTGNFYGKGADVEATLEIAGSGYGATSQNPKGSVPPVSAVNVYLPKGVKLHPSGFGSCAEATLKNIGPSGCPKSSVASPLGSVLGEVTFGTERVPETATLQAFFSVGGSILFYTQGSTPVSLEVVSTGRFVRSSGKYSWELKTLVPPVATVPGAPLASVSRIHLKAGAAYRSHGKVIPYGTVPKKGECPKGGFFGKSEVTFGGTYGGEREFGIPAKTVTNVIRVPCPRR*
Ga0104322_1464566	F003572	N/A	MYRPQPLTSDPEIIGGPTPIKAPRPGDTYRFKVQHGTAEKHVYVQIADSLRPEAFEEPLRSGIESKGESVLVKLLERGNVPTRIKITSAGITEVGIDRRQRACAL*