Scaffold Ga0105679_10413608

Overview

Basic Information

• Taxon OID: 3300007790
• Scaffold ID: Ga0105679_10413608
• Source Dataset Name: Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1878
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Zebra Blood And Desert Soils. Microbial Community Dynamics Using Metagenomics And Cultivation

Source Dataset Sampling Location

• Location Name: Etosha National Park, Namibia
• Coordinates
  • Lat. (^o): -19.03133
  • Long. (^o): 15.54865

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026118	Metagenome	199	Y
F040839	Metagenome	161	Y
F094354	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105679_104136081	F040839	AGGAG	MASRTTTSRGDYDLSDPVNGFVDVVRRVVLQPTAFFTGLPRQGSLLGPLVFALICIEVSAVLVGLLTFLDVPGGVTWLFGARGNQGFLAFVGGLVIAPIAGTVGVFLTALVTHLLVILVV
Ga0105679_104136082	F026118	AGAAG	MRLFGLEEKEARAAYHLSLAEELFEEISEDAYRKGGFPAVRGVHAWMHDEMDFGEHFHALRNQLARRVLQRDYPEGWGMRPRPSSDMRLD*
Ga0105679_104136085	F094354	AGAAGG	VSLLFALVVSLCAATVAALFVSMWRHGDFVAAAALAFALLPVLILTIMAWRAAL*