NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105679_10153617

Scaffold Ga0105679_10153617


Overview

Basic Information
Taxon OID3300007790 Open in IMG/M
Scaffold IDGa0105679_10153617 Open in IMG/M
Source Dataset NameMicrobial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNorwegian Sequencing Centre (NSC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1915
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Zebra Blood And Desert Soils. Microbial Community Dynamics Using Metagenomics And Cultivation

Source Dataset Sampling Location
Location NameEtosha National Park, Namibia
CoordinatesLat. (o)-19.03133Long. (o)15.54865Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001183Metagenome / Metatranscriptome755Y
F006339Metagenome375Y
F042552Metagenome158N
F042764Metagenome / Metatranscriptome157Y
F059706Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0105679_101536171F042764GAGMKFGRQLVTVPQADLLGRLHPMGEVIRPTGITYEDAMDAAQRGGGIDFVGRKARVVHLSQKSGRDTPHTAQIVLDLGEEYLTLLGYFSRDGEFMEEGREHPF*
Ga0105679_101536172F001183AGGAGLSEEEQRQRIRELVRKQTGMDWPELQVGEIEKAMSSVTLFYWGTKEEVGKRWHEKQLELTDEEAEYIGV*
Ga0105679_101536173F059706AGGAMSEKALRMLKHMRVQIRMQGIIQGTRAASVWGAARSIGLKPEEDEFDARLKELLRGGYIAPYPSPSLAAHGLYRMTDRGIAAAQEG*
Ga0105679_101536174F042552GAGGMTQSCWKDNDTVQERREQLLEELRKAEQARDLLRALEQNLSKEKSPDLAPHVRRLEQLAQSLPDDHMVRLVIESALGPSEYGNVSRARSAVEGEISTLQGALRYKAK*
Ga0105679_101536175F006339N/AMQNDQSAQDARTLLVALSSNHPEARRASPFVGMDRPFSPSWADAEQAGLDRVRRDAAIRWLIDNNMLERDEEAESLRDKGKEVPDDDYVYGAVFRITDSGRELLKEIWEEQRQL*
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