NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0105664_1134461

Scaffold Ga0105664_1134461


Overview

Basic Information
Taxon OID3300007756 Open in IMG/M
Scaffold IDGa0105664_1134461 Open in IMG/M
Source Dataset NameDiffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2115
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location NameNortheast Pacific Ocean
CoordinatesLat. (o)45.9372Long. (o)-130.082Alt. (m)Depth (m)1500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006550Metagenome / Metatranscriptome370N
F060053Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0105664_11344612F060053GGAGMAFGLIPAGTITRETIISTRRIPVAASESISKGQVCELVAGYLKKSPTTATVDVNHFVALEAVDNSSGSAGDLSAPVAVSGHYVTVVADGVIRPGARLQISASTAGQVITTGGGGNKQIGWYTGKEGGIISKDASTPFQETFTDTSDFPPVACADGDIIEIYLGL*
Ga0105664_11344613F006550GAGGMQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYDSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEVAVPNLLISIDTVTKFTGLEKLDQGMRARVKELPYTRSTFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVLAITETNTAQAASAAWDTFVSASDRSTGDPTVDIGIASLNIEGSGVGGKLNRVGMHQLTYAKFTGNTFLRGVASNGPRDYNYEPGTTDLVGIPGIGLVLDNGIKQGDIHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRLIT*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.