Scaffold Ga0105551_126366

Overview

Basic Information

• Taxon OID: 3300007741
• Scaffold ID: Ga0105551_126366
• Source Dataset Name: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', co12ds 200bp-25jan2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 520
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium oryzae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelcarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location

• Location Name: Dobu 'bubble' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.73665
  • Long. (^o): 150.867667

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085224	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105551_1263661	F085224	N/A	LRFKAIVMFPYSAFSGIMLELLEMGVPMFYPSKRLLKRWDESYGMMFQRTSGYGRRSAGGFSNVAYGKDLMPDPNDSVNREALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTSSTPA*