Scaffold Ga0104988_11003

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_11003
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 70533
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (33.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F033789	Metagenome / Metatranscriptome	176	Y
F057999	Metagenome	135	Y
F065739	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1100349	F033789	AGG	MFDDLPSPFMIGAIKLWPAHSRPGFPWFIAHNGKPYYFRSKEQAVLFAKDVQSGNDPEGL
Ga0104988_1100358	F057999	N/A	MNSLIFDMTSFTPTQGQWWSDHRNACIERRVSLEASCMGFFLWTASFRNAQSGQIITSKVFCTKPNSEEPLALFENGDDRQRWMEAQWEAPAA*
Ga0104988_1100363	F065739	N/A	MISLNHTVDQLTTAGHYTKFDGLERISIVVTVPDWHEPFPINVRMGAANPRQLEMVGLLHVCKTWYINGPVNDQWTISTLAGAINVPAGTRIESAELPEQWAAWQKAASTGKREWFAYSNGRTDFC*
Ga0104988_1100365	F005382	N/A	MDKTTLIKSFIRDAGSSIISVNFIKTNGEKRSLQFNPRDTQEIKGTGYKLTNPAIIRCRDFTIARTHGGGAWRSFDCNRVISIKAKGKILELQP*