Basic Information | |
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Taxon OID | 3300007735 Open in IMG/M |
Scaffold ID | Ga0104988_10895 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 36708 |
Total Scaffold Genes | 53 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (84.91%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000273 | Metagenome / Metatranscriptome | 1401 | Y |
F000649 | Metagenome / Metatranscriptome | 960 | Y |
F004450 | Metagenome | 437 | Y |
F042219 | Metagenome | 158 | N |
F060706 | Metagenome | 132 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104988_1089515 | F060706 | AGGA | MSKLSRDDNGQITIFGALGTTQVMTVTATSAQSTAVATGVTILRLANGSAAHCHFAIGSNPTASLTTSPMLPANAVEYVSCSSGDKVALIRGATATDVSITQIS* |
Ga0104988_1089520 | F004450 | AGG | VNWLAAGLVALVLSASYLLDGPSEHEARVDTAEEKIQKMCGENAGWKLLDDGSIQCFTHRGLKTKKVQL* |
Ga0104988_1089529 | F042219 | AGGTGG | MVKRQTVVVEESSFMLDEFKVKAESLVAQLELVKQEHDGKWGIKRIEMLVDANLRVKLHQQMERVYNAQRDRDIEKMEKAVAGMIKGYGVLDAWAEDNNIEQKPDINAVEWVMQDKSIMVVVQTHNDAVYYQQFRPELSNRHIWSMEELELLLESEVMKDIIKAKALMPGTRMTRIAAGGITGFDDLPDCDIDLSGELANPLFNFQHAKMMKAPASR* |
Ga0104988_108954 | F000649 | AGGCGG | MSKTKPHYLPDGKLYKGETHKAGSKLMTGAKHTPASKPLSHTPPKKK* |
Ga0104988_1089548 | F000273 | GGGGG | MNDDKGALIEKATFAILPLLFSCVVYLMSALSNLSHEVTILNSKISLVVTSDNKQASNSGAELAREKLRQDLEKEIQKNRDDIMHNKQEIAVINTRLEKK* |
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